Difference between revisions of "Genome viewer"
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− | + | [[File:GenomeAnnotTuto.png|thumb|700px|left|Genome annotation panel of the genome viewer]] | |
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* <span style="color:#ED1D34">'''Base pair position:'''</span> Show the position in base pair (bp) in the ''Listeria'' strain genome displayed. | * <span style="color:#ED1D34">'''Base pair position:'''</span> Show the position in base pair (bp) in the ''Listeria'' strain genome displayed. | ||
* <span style="color:#3965B0">'''Genome annotation:'''</span> All the genome features available are displayed here. With a fix color code. | * <span style="color:#3965B0">'''Genome annotation:'''</span> All the genome features available are displayed here. With a fix color code. | ||
* <span style="color:#009F75">'''Move view horizontally:'''</span> To move horizontally the genome viewer and browse the genome. | * <span style="color:#009F75">'''Move view horizontally:'''</span> To move horizontally the genome viewer and browse the genome. | ||
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+ | | [[File:AnnotationColor.png|thumb|500px|left|Genome feature color legend of the genome viewer]] | ||
+ | | All the genome features available are displayed here with their color code. | ||
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Revision as of 16:25, 18 October 2016
General organization
The genome viewer can be accessed through many pages on the Listeriomics website. From the home webpage, from the transcriptomics and proteomics summary pages, from the gene tool webpage, and from the small RNA tool webpage.
Control panel
Omics data viewer The panel in which "omics" datasets are displayed Genome annotation All genome features available for the displayed Listeria strain genome.
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Control panel
Add data
Two buttons are available to add datasets, one for transcriptomic data, the other for proteomic. Both will open a similar dialog with all datasets available. The user can filter datasets or directly search them. Every dataset selected will be displayed on the genome viewer by clicking on the Ok button. | |
Change view
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Manage data
There are 4 different buttons in this panel:
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Omics data viewer
The genome viewer will always display "omics" dataset in that order:
For each track the name of the dataset displayed is shown on the top left. The grey line in the middle of each track is the value 0. If the name of the dataset contains "vs" it means it is a relative expression dataset, thus Log(Fold Change) values are displayed. The type of data displayed is written at the end of each dataset name on the top left of each track.
When the height of the view has been increased or decrease using the Height zoom the vertical slider will be used to move from one dataset to the other. |
Genome annotation
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All the genome features available are displayed here with their color code. |