Summary

An interactive platform for analysis and publication of bacterial “omics” data.

File:OverviewBacnet.png

Tools available in BACNET platform

Summary

BACNET is a Java based platform, which allows to develop in parallel a highly interactive platform which work both on a local computers and internet servers. To reach this goal we use two highly connected APis , Eclipse RCP and Eclipse RAP (single sourcing). Our platform integrates different type of tools, the three most important being: A table tools for Heatmap drawing and manipulation. Genome viewer for displaying gene expression array (DNA microarray), tiling array, and RNA-Seq data along with proteomics and genomics data. This genome viewer is able to load quickly every data using streaming techniques, to zoom through the data from a nucleotide scale to a genome-wide scale, and overlay heterogeneous “omics” data. And an expression atlas, inspired from EBI Expression Atlas, for easily design a query based tool which connects every genomics elements (genes, smallRNAs, antisenseRNAs) to the most relevant “omics” data.

Tutorials

Install BACNET

Install and compile BACNET platform

First step in BACNET architecture	Create your own application, add a view, a menu, and you own Omics data.
First step in single sourcing	Rules on how to manage single sourcing and develop in parallel desktop and web application
First step in the desktop version	Create a desktop version of BACNET
First step in the web version	Deploy a BACNET website

Main class of BACNET	We explain the class architecture, focusing on the main class used
How-to - Genomics	Tutorials for different tools related to genomics
How-to - Transcriptomics	Tutorials for different tools related to transcriptomics (Arrays and RNASeq)
How-to	Every tutorial available

Screenshots

• MultiOmicsViewBacnet.png

  Multi omics view: Tiling array, Proteomics, TSS data, RNAseq, Genome annotation. Desktop version

• SingleSourcingBacnet.png

  Single sourcing allows to develop with same Java code a desktop and a web application

• SplashScreen.png

  Splash screen of BACNET platform

• ListeriomicsWebsite.png

  View of the Listeriomics website developed thanks to BACNET platform

• Environmentbacnet.png

  View of Eclipse environment in which BACNET is developed

• HeatMapBacnet.png

  HeatMap view (desktop version)

• VennDiagramBacnet.png

  Venn Diagram view (desktop version)

• SmallRnaBacnet.png

  Small RNA tool (desktop version)

• ExpressionAtlasWebBacnet.png

  Expression Atlas tool (web version)