Gene tools
Contents
Gene webpage
The gene webpage can be accessed either from the home webpage of the Listeriomics website or by double-clicking on a genome in the genomic webpage.
General organization
| Genomics button
It gives access the genomic tool which is designed to browse through every complete genome available. One can access strain name, serotype, lineage, and isolation information, along with a complete phylogram of the Listeria strains. By double clicking on a strain the list of annotated genes will appear in a new summary panel. |
| Transcriptomics button
A summary table shows every dataset available and a precise description of the biological conditions used to generate them. Filters are available to select a particular type of biological condition and data. A vast variety of datasets are available. In total, 4 different types of technology (Gene Expression array, Tiling array, RNASeq, TSS) are included for 7 different Listeria monocytogenes strains grown in 4 different broth media and 7 intracellular conditions. |
| Proteomics button
It gives access to a summary table of the 74 proteomics datasets. Once datasets are selected one can visualize them through a heatmap showing the presence or absence of each Listeria protein in a specific biological condition. Finally, each proteomic dataset can be displayed on the genome viewer along with transcriptomic datasets. |
| Proteomics button
It gives access to a summary table of the 74 proteomics datasets. Once datasets are selected one can visualize them through a heatmap showing the presence or absence of each Listeria protein in a specific biological condition. Finally, each proteomic dataset can be displayed on the genome viewer along with transcriptomic datasets. |
How-to access gene annotation ?
| Gene panel
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Is my gene conserved ?
| Gene panel
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Is my gene transcribed ?
| Gene panel
For each |
Is my gene translated ?
| Gene panel
For each |
