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| − | + | The Listeriomics website is a web-based software design to manage genomic, transcriptomic and proteomic data for 'Listeria' species. | |
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| + | It integrates different type of tools for “omics” data analyses: 1) A highly interactive genome viewer for display of gene expression arrays, tiling arrays, and RNA-Seq datasets along with proteomics and genomics datasets, 2) expression and protein atlas, which are tools to connect every genomic feature (genes, smallRNAs, antisenseRNAs) or proteins to the most relevant “omics” data, 3) a tool to explore gene conservation throughout Listeria strains, 4) a co-expression network tool to discover new potential regulation. | ||
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| + | The Listeriomics database includes all complete genomes, transcriptomes and proteomes published on 'Listeria' species to date. It allows biologists to analyse dynamically all these datasets in a user-friendly format, and can be used by bio-informaticians as a central database for systems biology analysis. | ||
= Tutorials = | = Tutorials = | ||
Revision as of 12:10, 16 April 2015
An interactive platform for analysis and publication of bacterial “omics” data.
Summary
The Listeriomics website is a web-based software design to manage genomic, transcriptomic and proteomic data for 'Listeria' species.
It integrates different type of tools for “omics” data analyses: 1) A highly interactive genome viewer for display of gene expression arrays, tiling arrays, and RNA-Seq datasets along with proteomics and genomics datasets, 2) expression and protein atlas, which are tools to connect every genomic feature (genes, smallRNAs, antisenseRNAs) or proteins to the most relevant “omics” data, 3) a tool to explore gene conservation throughout Listeria strains, 4) a co-expression network tool to discover new potential regulation.
The Listeriomics database includes all complete genomes, transcriptomes and proteomes published on 'Listeria' species to date. It allows biologists to analyse dynamically all these datasets in a user-friendly format, and can be used by bio-informaticians as a central database for systems biology analysis.
Tutorials
| Install BACNET | Install and compile BACNET platform |
| First step in BACNET architecture | Create your own application, add a view, a menu, and you own Omics data. |
| First step in single sourcing | Rules on how to manage single sourcing and develop in parallel desktop and web application |
| First step in the desktop version | Create a desktop version of BACNET |
| First step in the web version | Deploy a BACNET website |
| Main class of BACNET | We explain the class architecture, focusing on the main class used |
| How-to - Genomics | Tutorials for different tools related to genomics |
| How-to - Transcriptomics | Tutorials for different tools related to transcriptomics (Arrays and RNASeq) |
| How-to | Every tutorial available |
Screenshots
- MultiOmicsViewBacnet.png
Multi omics view: Tiling array, Proteomics, TSS data, RNAseq, Genome annotation. Desktop version
- SingleSourcingBacnet.png
Single sourcing allows to develop with same Java code a desktop and a web application
- SplashScreen.png
Splash screen of BACNET platform
- ListeriomicsWebsite.png
View of the Listeriomics website developed thanks to BACNET platform
- Environmentbacnet.png
View of Eclipse environment in which BACNET is developed
- HeatMapBacnet.png
HeatMap view (desktop version)
- VennDiagramBacnet.png
Venn Diagram view (desktop version)
- SmallRnaBacnet.png
Small RNA tool (desktop version)
- ExpressionAtlasWebBacnet.png
Expression Atlas tool (web version)
